Its been while...

So I got a 2016 Golf 7 GTi DSG recently, its now on about 69xxxKM. FSH and Service Plan until 90000km, Factory Warranty ends today actually but have an extended Warranty with Innovation Group.
Developed an issue last week with the start-stop system.
Happened during the morning drive to work, came to a stop and the system engaged. Lifted my foot off the brake and it doesn’t start, get the message on MFD says start car manually. No error showing for the start-stop system. Move to P, press the button and its struggles to start a bit but eventually does. Continue driving and the next few times the start-stop system engages and disengages. Then it did it again, this time it struggled alot more to start manually and eventually did. There was also a time when it made a weird (for the lack of a better description) “cluck” sound before it started again.
Car was fine for the drive home...booked in at VW Bryanston on Thursday and on the way there it did it twice. Car was scanned a the fault was picked up...the battery was charged and I was told to test...on the way home on Thursday again on two occasions it engages and then does not disengage when I lift off the brake pedal and struggles to start manually but eventually does.
Took it back Friday and on the way to VW it did it throughout the drive and through up the error on MFD after a few times.
Starting the car initially also makes that weird “cluck” noise before it starts.
Electronics running at the time of issue: lights+fogs, heater with fan on speed 1, drivers heated seat on 1 and radio. The first handful of times the start-stop system engages and disengages is fine and thereafter the issue occurs.
Another bit of history on the car - its had 2 x battery replacements in its 3yr existence and the onboard power supply unit was also replaced. Also the previous owner logged a number of road side assistance calls for flat battery.
Anyone else experience this type if issue with their start-stop systems, if so what was the outcome/resolution?
Car is still at VW they have logged a technical query with VWSA, they were told to charge the battery again and test.
Thanks